Transcript: LINC01548:3

Basic information

LNCipedia transcript ID: LINC01548:3 
HGNC Gene Symbol: LINC01548    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1548
Ensembl Gene ID: ENSG00000229086
Ensembl Transcript ID: ENST00000637328
Location (hg38): chr21:33165611-33170236
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 454 bp
Exons: 4
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000637328.1
Alternative gene names: ENSG00000229086.4; LINC01548;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -187.145 non-coding 
CPAT coding probability 9.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01548:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01548:3
5.0 LINC01548:3
5.1 LINC01548:3
5.2 LINC01548:3