Transcript: LINC01555:1

Basic information

LNCipedia transcript ID: LINC01555:1 
HGNC Gene Symbol: LINC01555    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1555
Ensembl Gene ID: ENSG00000180869
Ensembl Transcript ID: ENST00000370624
RefSeq ID: NR_027379
Location (hg38): chr1:84628230-84635020
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2884 bp
Exons: 3
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_027379; ENST00000370624.1; NR_027379.1
Alternative gene names: ENSG00000180869.4; LINC01555; FLJ35487


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.8922 non-coding 
CPAT coding probability 8.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01555:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf180-2:1
4.0 LINC01555:1
4.1 LINC01555:1
5.0 LINC01555:1
5.1 LINC01555:1
5.2 LINC01555:1