Transcript: LINC01556:2

Basic information

LNCipedia transcript ID: LINC01556:2 
HGNC Gene Symbol: LINC01556    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1556
Ensembl Gene ID: ENSG00000204709
Ensembl Transcript ID: ENST00000377186
Location (hg38): chr6:28943877-28944537
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 466 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000377186.3
Alternative gene names: ENSG00000204709.4; LINC01556; dJ25J6.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -109.0398 non-coding 
CPAT coding probability 10.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01556:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01556:2
4.1 LINC01556:2
5.0 LINC01556:2
5.1 LINC01556:2
5.2 LINC01556:2