Transcript: LINC01558:3

Basic information

LNCipedia transcript ID: LINC01558:3 
LNCipedia gene ID: LINC01558
Location (hg38): chr6:167784539-167796859
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1650 bp
Exons: 4
Sources: Refseq - Dec 2014
Alternative transcript names: NR_026773
Alternative gene names: HGC6.2; dJ431P23.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.3237 non-coding 
CPAT coding probability 2.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01558:3 no no no no

Available literature

  1. Minaguchi (1999), Complete DNA sequence and characterization of a 330-kb VNTR-rich region on chromosome 6q27 that is commonly deleted in ovarian cancer., DNA Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FRMD1-4:4
4.0 LINC01558:3
4.1 LINC01558:3
5.0 LINC01558:3
5.1 LINC01558:3
5.2 LINC01558:3