Transcript: LINC01558:4

Basic information

LNCipedia transcript ID: LINC01558:4 
HGNC Gene Symbol: LINC01558    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1558
Ensembl Gene ID: ENSG00000146521
Ensembl Transcript ID: ENST00000495520
RefSeq ID: NR_026773
Location (hg38): chr6:167784537-167796859
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1652 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000495520.5; NR_026773.1
Alternative gene names: ENSG00000146521.9; LINC01558; HGC6.2; dJ431P23.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 11.3237 non-coding 
CPAT coding probability 2.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01558:4 no no no no

Available literature

  1. Minaguchi (1999), Complete DNA sequence and characterization of a 330-kb VNTR-rich region on chromosome 6q27 that is commonly deleted in ovarian cancer., DNA Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01558:4
4.1 LINC01558:4
5.0 LINC01558:4
5.1 LINC01558:4
5.2 LINC01558:4