Transcript: LINC01558:6

Basic information

LNCipedia transcript ID: LINC01558:6 
LNCipedia gene ID: LINC01558
Location (hg38): chr6:167786212-167791332
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1782 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012364; NONHSAT116112
Alternative gene names: XLOC_005924; linc-TCP10-4; HGC6.2; dJ431P23.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.0101 non-coding 
CPAT coding probability 24.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01558:6 no no no no

Available literature

  1. Minaguchi (1999), Complete DNA sequence and characterization of a 330-kb VNTR-rich region on chromosome 6q27 that is commonly deleted in ovarian cancer., DNA Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FRMD1-4:3
3.1 lnc-FRMD1-4:3
4.0 LINC01558:6
4.1 LINC01558:6
5.0 LINC01558:6
5.1 LINC01558:6
5.2 LINC01558:6