Transcript: LINC01559:1

Basic information

LNCipedia transcript ID: LINC01559:1 
HGNC Gene Symbol: LINC01559    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1559
Ensembl Gene ID: ENSG00000180861
Ensembl Transcript ID: ENST00000531049
Location (hg38): chr12:13376229-13387167
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 683 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT027040; ENST00000531049.1
Alternative gene names: ENSG00000180861.9; LINC01559; FLJ33810


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -132.1508 non-coding 
CPAT coding probability 0.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01559:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C12orf36-1:1
4.0 LINC01559:1
4.1 LINC01559:1
5.0 LINC01559:1
5.1 LINC01559:1
5.2 LINC01559:1