Transcript: LINC01561:3

Basic information

LNCipedia transcript ID: LINC01561:3 
HGNC Gene Symbol: LINC01561    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1561
Ensembl Gene ID: ENSG00000177234
Ensembl Transcript ID: ENST00000369071
Location (hg38): chr10:120597949-120600124
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2176 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000369071.4
Alternative gene names: ENSG00000177234.7; LINC01561; FLJ37402; Em:AC023282.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -20.0077 non-coding 
CPAT coding probability 19.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01561:3 no no no no

Available literature

  1. Jiang (2018), Mixomics analysis of breast cancer: Long non-coding RNA linc01561 acts as ceRNA involved in the progression of breast cancer., Int. J. Biochem. Cell Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01561:3
4.1 LINC01561:3
5.0 LINC01561:3
5.1 LINC01561:3
5.2 LINC01561:3