Transcript: LINC01562:1

Basic information

LNCipedia transcript ID: LINC01562:1 
HGNC Gene Symbol: LINC01562    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1562
Ensembl Gene ID: ENSG00000203356
Ensembl Transcript ID: ENST00000366181
Location (hg38): chr1:51195095-51235096
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2366 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000366181; ENST00000366181.2; RP11-296A18.3-001; OTTHUMT00000022441.1; NONHSAT003187
Alternative gene names: ENSG00000203356; RP11-296A18.3; ENSG00000203356.2; OTTHUMG00000008195.1; LINC01562


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.9258 non-coding 
CPAT coding probability 2.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01562:1 no no no no

Available literature

  1. Chen (2015), Potential Role of lncRNAs in Contributing to Pathogenesis of Intervertebral Disc Degeneration Based on Microarray Data., Med. Sci. Monit.
  2. Wan (2014), Aberrantly expressed long noncoding RNAs in human intervertebral disc degeneration: a microarray related study., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TTC39A-1:1
3.1 lnc-TTC39A-1:1
4.0 LINC01562:1
4.1 LINC01562:1
5.0 LINC01562:1
5.1 LINC01562:1
5.2 LINC01562:1