Transcript: LINC01562:2

Basic information

LNCipedia transcript ID: LINC01562:2 
LNCipedia gene ID: LINC01562
Location (hg38): chr1:51235220-51236195
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 976 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000203356.2|HBMT00000063162.1
Alternative gene names: RP11-296A18.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -185.3429 non-coding 
CPAT coding probability 1.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01562:2 no no no no

Available literature

  1. Chen (2015), Potential Role of lncRNAs in Contributing to Pathogenesis of Intervertebral Disc Degeneration Based on Microarray Data., Med. Sci. Monit.
  2. Wan (2014), Aberrantly expressed long noncoding RNAs in human intervertebral disc degeneration: a microarray related study., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01562:2
5.0 LINC01562:2
5.1 LINC01562:2
5.2 LINC01562:2