Transcript: LINC01564:1

Basic information

LNCipedia transcript ID: LINC01564:1 
HGNC Gene Symbol: LINC01564    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1564
Ensembl Gene ID: ENSG00000235899
Ensembl Transcript ID: ENST00000448327
RefSeq ID: NR_125841
Location (hg38): chr6:53628380-53631394
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 566 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00011314; ENST00000448327.1; RP11-345L23.1-001; OTTHUMT00000040964.1; NONHSAT113191; NR_125841; NR_125841.1
Alternative gene names: XLOC_005327; linc-LRRC1-1; ENSG00000235899.1; RP11-345L23.1; OTTHUMG00000014881.1; LINC01564; TCONS_00011314


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -142.2172 non-coding 
CPAT coding probability 18.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01564:1 no no no no

Available literature

  1. Lee (2014), Long noncoding RNAs as putative biomarkers for prostate cancer detection., J Mol Diagn


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRC1-2:1
3.1 lnc-LRRC1-3:1
4.0 LINC01564:1
4.1 LINC01564:1
5.0 LINC01564:1
5.1 LINC01564:1
5.2 LINC01564:1