Transcript: LINC01566:3

Basic information

LNCipedia transcript ID: LINC01566:3 
HGNC Gene Symbol: LINC01566    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1566
Ensembl Gene ID: ENSG00000259841
Ensembl Transcript ID: ENST00000569242
Location (hg38): chr16:35363531-35390584
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2801 bp
Exons: 9
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569242.1; RP11-488I20.3-002; OTTHUMT00000431678.1; NONHSAT142184; NR_027079
Alternative gene names: ENSG00000259841.2; RP11-488I20.3; OTTHUMG00000176250.1; ENSG00000259841.6; LINC01566;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.4476 non-coding 
CPAT coding probability 30.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01566:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTD-2144E22.5.1-6:2
4.0 LINC01566:3
4.1 LINC01566:3
5.0 LINC01566:3
5.1 LINC01566:3
5.2 LINC01566:3