Transcript: LINC01570:6

Basic information

LNCipedia transcript ID: LINC01570:6 
HGNC Gene Symbol: LINC01570    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1570
Ensembl Gene ID: ENSG00000260338
Ensembl Transcript ID: ENST00000561572
Location (hg38): chr16:5610300-5611293
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 434 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561572.1; RP11-124K4.1-002; OTTHUMT00000435409.1
Alternative gene names: ENSG00000260338.1; RP11-124K4.1; OTTHUMG00000177115.1; LINC01570;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.6535 non-coding 
CPAT coding probability 1.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01570:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM86A-2:2
4.0 LINC01570:6
4.1 LINC01570:6
5.0 LINC01570:6
5.1 LINC01570:6
5.2 LINC01570:6