Transcript: LINC01574:2

Basic information

LNCipedia transcript ID: LINC01574:2 
LNCipedia gene ID: LINC01574
Location (hg38): chr5:176743144-176743859
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 337 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010189; NONHSAT105371
Alternative gene names: XLOC_004657; linc-UNC5A; HI-LNC12; TCONS_00009551


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -596.9308 non-coding 
CPAT coding probability 5.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01574:2 no no no no

Available literature

  1. Morán (2012), Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes., Cell Metab.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UNC5A-1:1
3.1 lnc-UNC5A-1:1
4.0 LINC01574:2
4.1 LINC01574:2
5.0 LINC01574:2
5.1 LINC01574:2
5.2 LINC01574:2