Transcript: LINC01574:3

Basic information

LNCipedia transcript ID: LINC01574:3 
LNCipedia gene ID: LINC01574
Location (hg38): chr5:176743205-176743802
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 491 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: TCONS_00009551; ENST00000512115; ENST00000512115.1; RP11-375B1.3-001; OTTHUMT00000372216.1
Alternative gene names: XLOC_004657; linc-UNC5A; ENSG00000248859; RP11-375B1.3; ENSG00000248859.1; OTTHUMG00000163231.1; HI-LNC12; TCONS_00009551


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -568.2458 non-coding 
CPAT coding probability 7.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01574:3 no no no no

Available literature

  1. Morán (2012), Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes., Cell Metab.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UNC5A-1:2
3.1 lnc-UNC5A-1:2
4.0 LINC01574:3
4.1 LINC01574:3
5.0 LINC01574:3
5.1 LINC01574:3
5.2 LINC01574:3