Transcript: LINC01574:6

Basic information

LNCipedia transcript ID: LINC01574:6 
LNCipedia gene ID: LINC01574
Location (hg38): chr5:176743336-176743871
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 429 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000248859.2|ENST00000512115.2
Alternative gene names: HI-LNC12; TCONS_00009551


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -175.642 non-coding 
CPAT coding probability 4.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01574:6 no no no no

Available literature

  1. Morán (2012), Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes., Cell Metab.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01574:6
5.0 LINC01574:6
5.1 LINC01574:6
5.2 LINC01574:6