Transcript: LINC01588:96

Basic information

LNCipedia transcript ID: LINC01588:96 
HGNC Gene Symbol: LINC01588    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1588
Ensembl Gene ID: ENSG00000214900
Ensembl Transcript ID: ENST00000556913
Location (hg38): chr14:49941936-49961960
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2460 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556913; ENST00000556913.1; RP11-58E21.4-003; OTTHUMT00000411891.1; NONHSAT036762
Alternative gene names: ENSG00000258946; RP11-58E21.4; ENSG00000258946.1; OTTHUMG00000171143.1; ENSG00000214900.9; LINC01588


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.619 non-coding 
CPAT coding probability 3.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01588:96 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C14orf182-1:4
3.1 lnc-C14orf182-1:2
4.0 lnc-C14orf183-1:27
4.1 lnc-C14orf183-1:27
5.0 lnc-C14orf183-1:27
5.1 LINC01588:49
5.2 LINC01588:96