Transcript: LINC01589:3

Basic information

LNCipedia transcript ID: LINC01589:3 
LNCipedia gene ID: LINC01589
Location (hg38): chr22:45604450-45606610
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1294 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029723; NONHSAT087238
Alternative gene names: XLOC_014399; linc-FBLN1-AS; CTA-941F9.9; TCONS_00029353


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 21.0984 non-coding 
CPAT coding probability 1.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01589:3 no no no no

Available literature

  1. Wang (2015), Long noncoding RNAs expression signatures in chondrogenic differentiation of human bone marrow mesenchymal stem cells., Biochem. Biophys. Res. Commun.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SMC1B-3:2
3.1 lnc-SMC1B-3:2
4.0 LINC01589:3
4.1 LINC01589:3
5.0 LINC01589:3
5.1 LINC01589:3
5.2 LINC01589:3