Transcript: LINC01591:1

Basic information

LNCipedia transcript ID: LINC01591:1 
HGNC Gene Symbol: LINC01591    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1591
Ensembl Gene ID: ENSG00000254083
Ensembl Transcript ID: ENST00000522279
RefSeq ID: NR_026706
Location (hg38): chr8:135234131-135299719
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1240 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000522279; ENST00000522279.1; RP11-452N4.1-001; OTTHUMT00000378292.1; NONHSAT129281; NR_026706; ENST00000522279.5; NR_026706.2
Alternative gene names: ENSG00000254083; RP11-452N4.1; ENSG00000254083.1; OTTHUMG00000164328.1; ENSG00000254083.5; LINC01591;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.0315 non-coding 
CPAT coding probability 53.16% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01591:1 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KHDRBS3-1:1
3.1 lnc-KHDRBS3-1:1
4.0 LINC01591:1
4.1 LINC01591:1
5.0 LINC01591:1
5.1 LINC01591:1
5.2 LINC01591:1