Transcript: LINC01596:5

Basic information

LNCipedia transcript ID: LINC01596:5 
HGNC Gene Symbol: LINC01596    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1596
Ensembl Gene ID: ENSG00000250666
Ensembl Transcript ID: ENST00000503609
RefSeq ID: NR_132380
Location (hg38): chr4:189881515-189884868
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 592 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00007705; ENST00000503609; ENST00000503609.1; RP11-463J17.1-001; OTTHUMT00000361300.1; NR_132380.1
Alternative gene names: XLOC_003843; linc-FRG1-1; ENSG00000250666; RP11-463J17.1; ENSG00000250666.1; OTTHUMG00000160584.1; LINC01596; TCONS_00007705


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.383 non-coding 
CPAT coding probability 3.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01596:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FRG1-1:2
3.1 lnc-FRG1-1:2
4.0 LINC01596:5
4.1 LINC01596:5
5.0 LINC01596:5
5.1 LINC01596:5
5.2 LINC01596:5