Transcript: LINC01597:2

Basic information

LNCipedia transcript ID: LINC01597:2 
LNCipedia gene ID: LINC01597
Location (hg38): chr20:30286961-30288311
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 553 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000454331; ENST00000454331.1; RP4-610C12.3-001; OTTHUMT00000078487.1; NONHSAT079267
Alternative gene names: ENSG00000225490; RP4-610C12.3; ENSG00000225490.1; OTTHUMG00000032152.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.0241 non-coding 
CPAT coding probability 0.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01597:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DEFB116-2:1
3.1 lnc-DEFB116-2:1
4.0 LINC01597:2
4.1 LINC01597:2
5.0 LINC01597:2
5.1 LINC01597:2
5.2 LINC01597:2