Transcript: LINC01597:3

Basic information

LNCipedia transcript ID: LINC01597:3 
LNCipedia gene ID: LINC01597
Location (hg38): chr20:30278906-30286537
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3328 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000380888; ENST00000380888.3; RP4-610C12.4-001; OTTHUMT00000256907.1; NONHSAT079263
Alternative gene names: ENSG00000205611; RP4-610C12.4; ENSG00000205611.3; OTTHUMG00000133197.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 95.0134 coding 
CPAT coding probability 12.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01597:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DEFB116-3:1
3.1 lnc-DEFB116-3:1
4.0 LINC01597:3
4.1 LINC01597:3
5.0 LINC01597:3
5.1 LINC01597:3
5.2 LINC01597:3