Transcript: LINC01605:16

Basic information

LNCipedia transcript ID: LINC01605:16 
LNCipedia gene ID: LINC01605
Ensembl Gene ID: ENSG00000253746
Ensembl Transcript ID: ENST00000520431
Location (hg38): chr8:37405439-37406724
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 578 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000520431; ENST00000520431.1; RP11-527N22.2-001; OTTHUMT00000378073.1; NONHSAT126033
Alternative gene names: ENSG00000253746; RP11-527N22.2; ENSG00000253746.1; OTTHUMG00000164278.1; TCONS_00014973; AC091182.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.0654 non-coding 
CPAT coding probability 0.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01605:16 no no no no

Available literature

  1. Forrest (2018), Colon Cancer-Upregulated Long Non-Coding RNA lincDUSP Regulates Cell Cycle Genes and Potentiates Resistance to Apoptosis., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-150O12.6.1-2:6
3.1 lnc-RP11-150O12.6.1-1:12
4.0 LINC01605:16
4.1 LINC01605:16
5.0 LINC01605:16
5.1 LINC01605:16
5.2 LINC01605:16