Transcript: LINC01605:5

Basic information

LNCipedia transcript ID: LINC01605:5 
LNCipedia gene ID: LINC01605
Location (hg38): chr8:37516450-37517021
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 470 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000521989.1; RP11-150O12.6-001; OTTHUMT00000378120.1
Alternative gene names: ENSG00000253414.1; RP11-150O12.6; OTTHUMG00000164286.1; TCONS_00014973


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -190.6442 non-coding 
CPAT coding probability 13.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01605:5 no no no no

Available literature

  1. Forrest (2018), Colon Cancer-Upregulated Long Non-Coding RNA lincDUSP Regulates Cell Cycle Genes and Potentiates Resistance to Apoptosis., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-150O12.6.1-1:4
4.0 LINC01605:5
4.1 LINC01605:5
5.0 LINC01605:5
5.1 LINC01605:5
5.2 LINC01605:5