Transcript: LINC01608:4

Basic information

LNCipedia transcript ID: LINC01608:4 
HGNC Gene Symbol: LINC01608    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1608
Ensembl Gene ID: ENSG00000253877
Ensembl Transcript ID: ENST00000524283
RefSeq ID: NR_125417
Location (hg38): chr8:110937690-111027433
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 561 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000524283; ENST00000524283.1; RP11-946L20.2-001; OTTHUMT00000380888.1; NONHSAT128314; NR_125417; ENST00000524283.5; NR_125417.1
Alternative gene names: ENSG00000253877; RP11-946L20.2; ENSG00000253877.1; OTTHUMG00000164908.1; ENSG00000253877.5; LINC01608; TCONS_00015136


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.2489 non-coding 
CPAT coding probability 3.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01608:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNV1-2:3
3.1 lnc-KCNV1-2:3
4.0 LINC01608:4
4.1 LINC01608:4
5.0 LINC01608:4
5.1 LINC01608:4
5.2 LINC01608:4