Transcript: LINC01609:3

Basic information

LNCipedia transcript ID: LINC01609:3 
HGNC Gene Symbol: LINC01609    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1609
Ensembl Gene ID: ENSG00000253103
Ensembl Transcript ID: ENST00000519506
Location (hg38): chr8:111098961-111236171
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 424 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000519506; ENST00000519506.1; RP11-946L20.4-001; OTTHUMT00000380895.1; NONHSAT128321
Alternative gene names: ENSG00000253103; RP11-946L20.4; ENSG00000253103.1; OTTHUMG00000164912.1; LINC01609;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.0961 non-coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01609:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CSMD3-2:2
3.1 lnc-CSMD3-3:2
4.0 LINC01609:3
4.1 LINC01609:3
5.0 LINC01609:3
5.1 LINC01609:3
5.2 LINC01609:3