Transcript: LINC01612:3

Basic information

LNCipedia transcript ID: LINC01612:3 
LNCipedia gene ID: LINC01612
Location (hg38): chr4:170226605-170278375
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 285 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008932; NONHSAT099182
Alternative gene names: XLOC_003775; linc-GALNTL6-4; RP11-789C1.1; TCONS_00008319


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 2.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01612:3 no no no no

Available literature

  1. Song (2016), Identification of differentially expressed signatures of long non-coding RNAs associated with different metastatic potentials in gastric cancer., J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLCN3-3:2
3.1 lnc-CLCN3-4:2
4.0 LINC01612:3
4.1 LINC01612:3
5.0 LINC01612:3
5.1 LINC01612:3
5.2 LINC01612:3