Transcript: LINC01612:5

Basic information

LNCipedia transcript ID: LINC01612:5 
LNCipedia gene ID: LINC01612
Location (hg38): chr4:170226626-170283715
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1217 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00008319
Alternative gene names: XLOC_003775; linc-GALNTL6-4; RP11-789C1.1; TCONS_00008319


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -162.0009 non-coding 
CPAT coding probability 6.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01612:5 no no no no

Available literature

  1. Song (2016), Identification of differentially expressed signatures of long non-coding RNAs associated with different metastatic potentials in gastric cancer., J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLCN3-3:3
3.1 lnc-CLCN3-4:3
4.0 LINC01612:5
4.1 LINC01612:5
5.0 LINC01612:5
5.1 LINC01612:5
5.2 LINC01612:5