Transcript: LINC01612:6

Basic information

LNCipedia transcript ID: LINC01612:6 
HGNC Gene Symbol: LINC01612    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1612
Ensembl Gene ID: ENSG00000250266
Ensembl Transcript ID: ENST00000504509
Location (hg38): chr4:170273919-170283079
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 469 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007679; ENST00000504509; ENST00000504509.1; RP11-789C1.1-001; OTTHUMT00000362847.1; NONHSAT099184
Alternative gene names: XLOC_003775; linc-GALNTL6-4; ENSG00000250266; RP11-789C1.1; ENSG00000250266.1; OTTHUMG00000160893.1; LINC01612; TCONS_00008319


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -162.0009 non-coding 
CPAT coding probability 7.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01612:6 no no no no

Available literature

  1. Song (2016), Identification of differentially expressed signatures of long non-coding RNAs associated with different metastatic potentials in gastric cancer., J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLCN3-3:4
3.1 lnc-CLCN3-4:4
4.0 LINC01612:6
4.1 LINC01612:6
5.0 LINC01612:6
5.1 LINC01612:6
5.2 LINC01612:6