Transcript: LINC01614:6

Basic information

LNCipedia transcript ID: LINC01614:6 
LNCipedia gene ID: LINC01614
Ensembl Gene ID: ENSG00000237525
Ensembl Transcript ID: ENST00000428487
Location (hg38): chr2:215678024-215689771
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 508 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003104; ENST00000428487; ENST00000428487.1; AC012668.2-003; OTTHUMT00000337313.1; NONHSAT076776
Alternative gene names: XLOC_001849; linc-TMEM169-4; ENSG00000237525; AC012668.2; ENSG00000237525.2; OTTHUMG00000154833.2; ENSG00000237525.6; LCAL4; TCONS_00003105; AC012668.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -167.0729 non-coding 
CPAT coding probability 3.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01614:6 no no no no

Available literature

  1. White (2014), Transcriptome sequencing reveals altered long intergenic non-coding RNAs in lung cancer., Genome Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATIC-6:4
3.1 lnc-ATIC-7:4
4.0 LINC01614:6
4.1 LINC01614:6
5.0 LINC01614:6
5.1 LINC01614:6
5.2 LINC01614:6