Transcript: LINC01622:21

Basic information

LNCipedia transcript ID: LINC01622:21 
LNCipedia gene ID: LINC01622
Location (hg38): chr6:1098572-1131764
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2638 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000261730.1|ENCT00000380909.1
Alternative gene names: TCONS_00011202


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -102.9045 non-coding 
CPAT coding probability 9.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01622:21 no no no no

Available literature

  1. Bánfai (2012), Long noncoding RNAs are rarely translated in two human cell lines., Genome Res.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01622:21
5.0 LINC01622:21
5.1 LINC01622:21
5.2 LINC01622:21