Transcript: LINC01622:4

Basic information

LNCipedia transcript ID: LINC01622:4 
LNCipedia gene ID: LINC01622
Location (hg38): chr6:1099128-1131038
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2308 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT106372
Alternative gene names: TCONS_00011202


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -150.5936 non-coding 
CPAT coding probability 10.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01622:4 no no no no

Available literature

  1. Bánfai (2012), Long noncoding RNAs are rarely translated in two human cell lines., Genome Res.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EXOC2-5:9
4.0 LINC01622:4
4.1 LINC01622:4
5.0 LINC01622:4
5.1 LINC01622:4
5.2 LINC01622:4