Transcript: LINC01623:3

Basic information

LNCipedia transcript ID: LINC01623:3 
HGNC Gene Symbol: LINC01623    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1623
Ensembl Gene ID: ENSG00000225595
Ensembl Transcript ID: ENST00000606727
Location (hg38): chr6:28861150-28863677
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1260 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606727.1
Alternative gene names: ENSG00000225595.2; XXbac-BPG308K3.6; LINC01623;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 65.0004 coding 
CPAT coding probability 42.97% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01623:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRIM27-3:3
4.0 LINC01623:3
4.1 LINC01623:3
5.0 LINC01623:3
5.1 LINC01623:3
5.2 LINC01623:3