Transcript: LINC01624:2

Basic information

LNCipedia transcript ID: LINC01624:2 
HGNC Gene Symbol: LINC01624    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1624
Ensembl Gene ID: ENSG00000227508
Ensembl Transcript ID: ENST00000607074
Location (hg38): chr6:170272474-170279887
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3265 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607074.1
Alternative gene names: ENSG00000227508.2; RP5-894D12.3; ENSG00000227508.6; LINC01624; TCONS_00011425


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.2384 non-coding 
CPAT coding probability 14.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01624:2 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM120B-2:4
4.0 LINC01624:2
4.1 LINC01624:2
5.0 LINC01624:2
5.1 LINC01624:2
5.2 LINC01624:2