Transcript: LINC01625:2

Basic information

LNCipedia transcript ID: LINC01625:2 
HGNC Gene Symbol: LINC01625    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1625
Ensembl Gene ID: ENSG00000238099
Ensembl Transcript ID: ENST00000454788
RefSeq ID: NR_033919
Location (hg38): chr6:139468995-139474596
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1690 bp
Exons: 4
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00011139; NONHSAT115254; NR_033919; ENST00000454788.2; NR_033919.1
Alternative gene names: XLOC_005856; linc-CITED2-2; ENSG00000238099.2; LINC01625; TCONS_00011139


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.452 non-coding 
CPAT coding probability 8.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01625:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CITED2-1:2
3.1 lnc-CITED2-1:2
4.0 LINC01625:2
4.1 LINC01625:2
5.0 LINC01625:2
5.1 LINC01625:2
5.2 LINC01625:2