Transcript: LINC01628:1

Basic information

LNCipedia transcript ID: LINC01628:1 
LNCipedia gene ID: LINC01628
Location (hg38): chr2:66921510-66922499
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 270 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004294; NONHSAT071250
Alternative gene names: XLOC_002141; linc-SPRED2-8; AC007403.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -220.0319 non-coding 
CPAT coding probability 0.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01628:1 no no no no

Available literature

  1. Tang (2015), Three circulating long non-coding RNAs act as biomarkers for predicting NSCLC., Cell. Physiol. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1D-4:1
3.1 lnc-C1D-4:1
4.0 LINC01628:1
4.1 LINC01628:1
5.0 LINC01628:1
5.1 LINC01628:1
5.2 LINC01628:1