Transcript: LINC01628:3

Basic information

LNCipedia transcript ID: LINC01628:3 
HGNC Gene Symbol: LINC01628    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1628
Ensembl Gene ID: ENSG00000232688
Ensembl Transcript ID: ENST00000444266
Location (hg38): chr2:66921510-66922457
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 397 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003314; ENST00000444266; ENST00000444266.1; AC007403.1-001; OTTHUMT00000328261.1; NONHSAT071252
Alternative gene names: XLOC_002141; linc-SPRED2-8; ENSG00000232688; AC007403.1; ENSG00000232688.1; OTTHUMG00000152852.1; LINC01628


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -223.1449 non-coding 
CPAT coding probability 0.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01628:3 no no no no

Available literature

  1. Tang (2015), Three circulating long non-coding RNAs act as biomarkers for predicting NSCLC., Cell. Physiol. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1D-4:2
3.1 lnc-C1D-4:2
4.0 LINC01628:3
4.1 LINC01628:3
5.0 LINC01628:3
5.1 LINC01628:3
5.2 LINC01628:3