Transcript: LINC01628:4

Basic information

LNCipedia transcript ID: LINC01628:4 
LNCipedia gene ID: LINC01628
Location (hg38): chr2:66921510-66922242
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 261 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004293; NONHSAT071251
Alternative gene names: XLOC_002141; linc-SPRED2-8; AC007403.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -223.1449 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01628:4 no no no no

Available literature

  1. Tang (2015), Three circulating long non-coding RNAs act as biomarkers for predicting NSCLC., Cell. Physiol. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1D-4:3
3.1 lnc-C1D-4:3
4.0 LINC01628:4
4.1 LINC01628:4
5.0 LINC01628:4
5.1 LINC01628:4
5.2 LINC01628:4