Transcript: LINC01629:3

Basic information

LNCipedia transcript ID: LINC01629:3 
LNCipedia gene ID: LINC01629
Location (hg38): chr14:76959675-76966221
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 686 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00022562; NONHSAT037938
Alternative gene names: XLOC_010881; linc-KIAA1737-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.8125 non-coding 
CPAT coding probability 6.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01629:3 no no no no

Available literature

  1. Lin (2015), The long noncoding RNA landscape in hypoxic and inflammatory renal epithelial injury., Am. J. Physiol. Renal Physiol.
  2. Idogawa (2014), Identification and analysis of large intergenic non-coding RNAs regulated by p53 family members through a genome-wide analysis of p53-binding sites., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C14orf166B-3:2
3.1 lnc-C14orf166B-3:2
4.0 LINC01629:3
4.1 LINC01629:3
5.0 LINC01629:3
5.1 LINC01629:3
5.2 LINC01629:3