Transcript: LINC01630:19

Basic information

LNCipedia transcript ID: LINC01630:19 
HGNC Gene Symbol: LINC01630    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1630
Ensembl Gene ID: ENSG00000227115
Ensembl Transcript ID: ENST00000583609
Location (hg38): chr18:51392042-51560629
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 571 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000583609.1; RP11-267C16.1-003; OTTHUMT00000447679.1; NONHSAT059308; ENST00000583609.5
Alternative gene names: ENSG00000227115.2; RP11-267C16.1; OTTHUMG00000179692.2; ENSG00000227115.7; LINC01630


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.6218 non-coding 
CPAT coding probability 17.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01630:19 no no no no

Available literature

  1. Kazemzadeh (2017), Misregulation of the dependence receptor DCC and its upstream lincRNA, LOC100287225, in colorectal cancer., Tumori


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC109315.1-2:5
4.0 lnc-AC109315.1-2:5
4.1 lnc-AC109315.1-2:5
5.0 lnc-AC109315.1-2:5
5.1 LINC01630:8
5.2 LINC01630:19