Transcript: LINC01630:20

Basic information

LNCipedia transcript ID: LINC01630:20 
LNCipedia gene ID: LINC01630
RefSeq ID: NR_040074
Location (hg38): chr18:51392042-51562469
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1799 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000435144.1; RP11-267C16.1-002; OTTHUMT00000447680.1; NONHSAT059309; NR_040074; NR_040074.1
Alternative gene names: ENSG00000227115.2; RP11-267C16.1; OTTHUMG00000179692.2; LOC100287225


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -104.3303 non-coding 
CPAT coding probability 6.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01630:20 no no no no

Available literature

  1. Kazemzadeh (2017), Misregulation of the dependence receptor DCC and its upstream lincRNA, LOC100287225, in colorectal cancer., Tumori


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC109315.1-2:6
4.0 lnc-AC109315.1-2:6
4.1 lnc-AC109315.1-2:6
5.0 lnc-AC109315.1-2:6
5.1 LINC01630:9
5.2 LINC01630:20