Transcript: LINC01630:22

Basic information

LNCipedia transcript ID: LINC01630:22 
HGNC Gene Symbol: LINC01630    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1630
Ensembl Gene ID: ENSG00000227115
Ensembl Transcript ID: ENST00000635103
Location (hg38): chr18:51560821-51643939
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4292 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000635103.1
Alternative gene names: ENSG00000227115.7; RP11-267C16.1; LINC01630


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -41.8634 non-coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01630:22 no no no no

Available literature

  1. Kazemzadeh (2017), Misregulation of the dependence receptor DCC and its upstream lincRNA, LOC100287225, in colorectal cancer., Tumori


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC109315.1-2:10
4.1 lnc-AC109315.1-2:10
5.0 lnc-AC109315.1-2:10
5.1 LINC01630:11
5.2 LINC01630:22