Transcript: LINC01630:23

Basic information

LNCipedia transcript ID: LINC01630:23 
LNCipedia gene ID: LINC01630
Location (hg38): chr18:51564275-51578677
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 477 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026329; NONHSAT059313
Alternative gene names: XLOC_012676; linc-DCC-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.2191 non-coding 
CPAT coding probability 11.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01630:23 no no no no

Available literature

  1. Kazemzadeh (2017), Misregulation of the dependence receptor DCC and its upstream lincRNA, LOC100287225, in colorectal cancer., Tumori


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC109315.1-1:1
3.1 lnc-AC109315.1-1:1
4.0 lnc-AC109315.1-2:11
4.1 lnc-AC109315.1-2:11
5.0 lnc-AC109315.1-2:11
5.1 LINC01630:12
5.2 LINC01630:23