Transcript: LINC01640:3

Basic information

LNCipedia transcript ID: LINC01640:3 
HGNC Gene Symbol: LINC01640    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1640
Ensembl Gene ID: ENSG00000231253
Ensembl Transcript ID: ENST00000452505
RefSeq ID: NR_134617
Location (hg38): chr22:33108529-33116294
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 550 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00029416; ENST00000452505; ENST00000452505.1; RP1-302D9.2-001; OTTHUMT00000315701.1; NONHSAT084997; NR_134617.1
Alternative gene names: XLOC_014215; linc-ISX-4; ENSG00000231253; RP1-302D9.2; ENSG00000231253.1; OTTHUMG00000150002.1; LINC01640; LOC105373006


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -79.7378 non-coding 
CPAT coding probability 1.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01640:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TIMP3-2:1
3.1 lnc-TIMP3-3:1
4.0 lnc-TIMP3-3:1
4.1 lnc-TIMP3-3:1
5.0 lnc-TIMP3-3:1
5.1 LINC01640:2
5.2 LINC01640:3