Transcript: LINC01641:5

Basic information

LNCipedia transcript ID: LINC01641:5 
HGNC Gene Symbol: LINC01641    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1641
Ensembl Gene ID: ENSG00000234277
Ensembl Transcript ID: ENST00000445817
Location (hg38): chr1:227393591-227431035
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1971 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000445817.1; CTD-2090I13.1-001; OTTHUMT00000091688.1; NONHSAT009920
Alternative gene names: ENSG00000234277.2; CTD-2090I13.1; OTTHUMG00000037611.1; LINC01641


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.5171 non-coding 
CPAT coding probability 6.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01641:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF678-1:1
4.0 lnc-ZNF678-1:1
4.1 lnc-ZNF678-1:1
5.0 lnc-ZNF678-1:1
5.1 LINC01641:2
5.2 LINC01641:5