Transcript: LINC01641:7

Basic information

LNCipedia transcript ID: LINC01641:7 
HGNC Gene Symbol: LINC01641    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1641
Ensembl Gene ID: ENSG00000234277
Ensembl Transcript ID: ENST00000436377
Location (hg38): chr1:227409765-227426057
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 422 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000436377.1; CTD-2090I13.1-002; OTTHUMT00000091689.1; NONHSAT009922
Alternative gene names: ENSG00000234277.2; CTD-2090I13.1; OTTHUMG00000037611.1; LINC01641


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.0494 non-coding 
CPAT coding probability 2.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01641:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF678-1:2
4.0 lnc-ZNF678-1:2
4.1 lnc-ZNF678-1:2
5.0 lnc-ZNF678-1:2
5.1 LINC01641:4
5.2 LINC01641:7