Transcript: LINC01646:7

Basic information

LNCipedia transcript ID: LINC01646:7 
HGNC Gene Symbol: LINC01646    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1646
Ensembl Gene ID: ENSG00000232596
Ensembl Transcript ID: ENST00000634256
Location (hg38): chr1:4571481-4594009
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1107 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000634256.1
Alternative gene names: ENSG00000232596.2; RP1-37J18.2; LINC01646


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 9.1586 non-coding 
CPAT coding probability 12.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01646:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AJAP1-1:4
4.1 lnc-AJAP1-1:4
5.0 lnc-AJAP1-1:4
5.1 LINC01646:2
5.2 LINC01646:7