Transcript: LINC01647:5

Basic information

LNCipedia transcript ID: LINC01647:5 
HGNC Gene Symbol: LINC01647    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1647
Ensembl Gene ID: ENSG00000235643
Ensembl Transcript ID: ENST00000453135
RefSeq ID: NR_104624
Location (hg38): chr1:11609531-11613355
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1285 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000153; ENST00000453135; ENST00000453135.1; RP1-69M21.2-001; OTTHUMT00000005777.1; NONHSAT000903; NR_104624.1
Alternative gene names: XLOC_000053; linc-FBXO44; ENSG00000235643; RP1-69M21.2; ENSG00000235643.1; OTTHUMG00000002076.1; LINC01647; LOC101929181


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.704 non-coding 
CPAT coding probability 1.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01647:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FBXO44-1:1
3.1 lnc-FBXO44-1:1
4.0 lnc-FBXO44-1:1
4.1 lnc-FBXO44-1:1
5.0 lnc-FBXO44-1:1
5.1 LINC01647:2
5.2 LINC01647:5