Transcript: LINC01649:10

Basic information

LNCipedia transcript ID: LINC01649:10 
LNCipedia gene ID: LINC01649
RefSeq ID: NR_125969
Location (hg38): chr1:115919376-115925908
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1396 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000438885; ENST00000438885.1; RP11-12L8.1-001; OTTHUMT00000033222.1; NONHSAT005400; NR_125969; NR_125969.1
Alternative gene names: ENSG00000228127; RP11-12L8.1; ENSG00000228127.1; OTTHUMG00000012009.1; LOC101928995


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -79.1653 non-coding 
CPAT coding probability 1.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01649:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC22A15-2:2
3.1 lnc-SLC22A15-2:2
4.0 lnc-SLC22A15-2:2
4.1 lnc-SLC22A15-2:2
5.0 lnc-SLC22A15-2:2
5.1 LINC01649:4
5.2 LINC01649:10