Transcript: LINC01649:11

Basic information

LNCipedia transcript ID: LINC01649:11 
HGNC Gene Symbol: LINC01649    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1649
Ensembl Gene ID: ENSG00000228127
Ensembl Transcript ID: ENST00000438885
Location (hg38): chr1:115919388-115925901
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1498 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438885.2
Alternative gene names: ENSG00000228127.2; RP11-12L8.1; LINC01649


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -79.1653 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01649:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SLC22A15-2:5
4.1 lnc-SLC22A15-2:5
5.0 lnc-SLC22A15-2:5
5.1 LINC01649:5
5.2 LINC01649:11